miRBase entry: cin-mir-4163

Stem-loop cin-mir-4163


Accession
MI0015718
Description
Ciona intestinalis cin-mir-4163 precursor miRNA


Sequence

2 reads, 1 reads per million, 1 experiments
UGUAUAUUACAGAGGGGGAUuuccguuuagguuaACCCACCUCUGUAGUAUACA
((((((((((((((((((.(..((.....))..).))).)))))))))))))))

Structure
               -   A uu  g 
UGUAUAUUACAGAGG GGG U  cc u
||||||||||||||| ||| |  || u
ACAUAUGAUGUCUCC CCC a  gg u
               A   A uu  a 


Annotation confidence Not enough data
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Genome context
9p: 366113-366166 [-]

Database links

Mature cin-miR-4163-5p

Accession MIMAT0016770
Description Ciona intestinalis cin-miR-4163-5p mature miRNA
Sequence 1 - UGUAUAUUACAGAGGGGGAU - 20
Evidence experimental
Illumina [1]

Mature cin-miR-4163-3p

Accession MIMAT0016771
Description Ciona intestinalis cin-miR-4163-3p mature miRNA
Sequence 35 - ACCCACCUCUGUAGUAUACA - 54
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39