miRBase entry: cin-mir-4169

Stem-loop cin-mir-4169


Accession
MI0015724
Description
Ciona intestinalis cin-mir-4169 precursor miRNA


Sequence

ccuccgcuguuucacugugggaaguGAGCGCACGAGCGAAAAGG
(((.((((((((((((......))))))...)).))))...)))

Structure
   --c    -  ---      gu 
ccu   cgcu gu   uucacu  g
|||   |||| ||   ||||||   
GGA   GCGA CA   GAGuga  g
   AAA    G  CGC      ag 


Annotation confidence Not enough data
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Genome context
1q: 957990-958033 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cin-mir-4169
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cin-miR-4169-3p

Accession MIMAT0016777
Description Ciona intestinalis cin-miR-4169-3p mature miRNA
Sequence 26 - GAGCGCACGAGCGAAAAGG - 44
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39