Stem-loop cin-mir-4179a

Accession

MI0015735

Description

Ciona intestinalis cin-mir-4179a precursor miRNA

Sequence

CAGCUCAUCUGGUAUAAAaacauacuguauuuccgacauuacuacguUUUUAUACAAGAUUAGCC
..(((.((((.((((((((((.....(((..........)))...)))))))))).)))).))).

Structure

CA   C    G          auacu   uuuc 
  GCU AUCU GUAUAAAaac     gua    c
  ||| |||| ||||||||||     |||     
  CGA UAGA CAUAUUUUug     cau    g
-C   U    A          --cau   uaca 

Annotation confidence Not enough data

Genome context

8q: 3472200-3472264 [+]

Mature cin-miR-4179a-5p

• Accession: MIMAT0016790
• Description: Ciona intestinalis cin-miR-4179a-5p mature miRNA
• Sequence: 1 - CAGCUCAUCUGGUAUAAA - 18
• Evidence: experimental ; Illumina [1]

Mature cin-miR-4179a-3p

• Accession: MIMAT0016791
• Description: Ciona intestinalis cin-miR-4179a-3p mature miRNA
• Sequence: 48 - UUUUAUACAAGAUUAGCC - 65
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39