Stem-loop cin-mir-4180

Accession

MI0015736

Description

Ciona intestinalis cin-mir-4180 precursor miRNA

Sequence

2 reads, 1 reads per million, 1 experiments

UCUGCCAUACCCUGAGACUUUaucaugguaugauguugguuaucuaauauuacacuacuggugguaGAAUCUUACUGUAUGGCAG
.(((((((((..(((((.(((((((((((.(((((((((....))))))))).)))....)))))))).)))))..)))))))))

Structure

U         CC     C        ----   a         u 
 CUGCCAUAC  UGAGA UUUaucau    ggu ugauguugg u
 |||||||||  ||||| ||||||||    ||| |||||||||  
 GACGGUAUG  AUUCU AGauggug    uca auuauaauc a
-         UC     A        guca   c         u 

Annotation confidence Not enough data

Genome context

scaffold_26: 397164-397248 [-]

Mature cin-miR-4180-5p

• Accession: MIMAT0016792
• Description: Ciona intestinalis cin-miR-4180-5p mature miRNA
• Sequence: 1 - UCUGCCAUACCCUGAGACUUU - 21
• Evidence: experimental ; Illumina [1]

Mature cin-miR-4180-3p

• Accession: MIMAT0016793
• Description: Ciona intestinalis cin-miR-4180-3p mature miRNA
• Sequence: 67 - GAAUCUUACUGUAUGGCAG - 85
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39