miRBase entry: cin-mir-4005c

Stem-loop cin-mir-4005c


Accession
MI0015741
Description
Ciona intestinalis cin-mir-4005c precursor miRNA


Sequence

4 reads, 3 reads per million, 2 experiments
UGAGUUGGUAUGUUUCUGGUaguacuguacgucacuaggggaaguaccagcuuca
.((((((((((.((((((((.(.((.....)))))))))))..))))))))))..

Structure
-U          -G        a u  u 
  GAGUUGGUAU  UUUCUGGU g ac g
  ||||||||||  |||||||| | || u
  uucgaccaug  ggggauca c ug a
ac          aa        - -  c 


Annotation confidence Not enough data
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Genome context
3q: 1937694-1937748 [+]

Database links

Mature cin-miR-4005c-5p

Accession MIMAT0016801
Description Ciona intestinalis cin-miR-4005c-5p mature miRNA
Sequence 1 - UGAGUUGGUAUGUUUCUGGU - 20
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39