Stem-loop cin-mir-4185

Accession

MI0015742

Description

Ciona intestinalis cin-mir-4185 precursor miRNA

Sequence

5 reads, 2 reads per million, 2 experiments

CAGCGGUGAUGAUAAUACcuggacgugauuuauaaugaugcauguUGUAUUCAUACUGUCUGAGCUG
((((((((.(((..((((...((((((..(((...)))..)))))))))))))))))).))).....

Structure

-----   -     A   UA    cug      au   u 
     CAG CGGUG UGA  AUAC   gacgug  uua  
     ||| ||||| |||  ||||   ||||||  ||| a
     GUC GUCAU ACU  UAUG   Uuguac  agu  
GUCGA   U     -   --    ---      gu   a 

Annotation confidence Not enough data

Genome context

9q: 3199937-3200003 [+]

Mature cin-miR-4185-5p

• Accession: MIMAT0016802
• Description: Ciona intestinalis cin-miR-4185-5p mature miRNA
• Sequence: 1 - CAGCGGUGAUGAUAAUAC - 18
• Evidence: experimental ; Illumina [1]

Mature cin-miR-4185-3p

• Accession: MIMAT0016803
• Description: Ciona intestinalis cin-miR-4185-3p mature miRNA
• Sequence: 46 - UGUAUUCAUACUGUCUGAGCUG - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39