Stem-loop cin-mir-4191

Accession

MI0015748

Description

Ciona intestinalis cin-mir-4191 precursor miRNA

Sequence

8 reads, 5 reads per million, 1 experiments

AGGUUUAUGAUCGUAACAAUagguugaguuaaaauuuaacgaauuuuauuguucguucacaaacac
..((((.(((.((.(((((((((.(..(((((...)))))..).))))))))))).))).))))..

Structure

AG    A   U  U         u ga     a 
  GUUU UGA CG AACAAUagg u  guuaa  
  |||| ||| || ||||||||| |  ||||| a
  caaa acu gc uuguuauuu a  caauu  
ca    c   u  -         u ag     u 

Annotation confidence Not enough data

Genome context

scaffold_158: 76827-76892 [-]

Mature cin-miR-4191-5p

• Accession: MIMAT0016809
• Description: Ciona intestinalis cin-miR-4191-5p mature miRNA
• Sequence: 1 - AGGUUUAUGAUCGUAACAAU - 20
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39