miRBase entry: cin-mir-4201

Stem-loop cin-mir-4201


Accession
MI0015758
Description
Ciona intestinalis cin-mir-4201 precursor miRNA


Sequence

7 reads, 3 reads per million, 2 experiments
GGCAUUGAUAUGUGGGUUGGaauaugugagaaucuggaagaagcguaacaaacc
....(((.(((((...(((((...........))))).....))))).)))...

Structure
GGCA   A     --GGG     auau 
    UUG UAUGU     UUGGa    g
    ||| |||||     |||||    u
    aac augcg     ggucu    g
-cca   a     aagaa     aaga 


Annotation confidence Not enough data
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Genome context
13q: 2276825-2276878 [-]

Database links

Mature cin-miR-4201-5p

Accession MIMAT0016821
Description Ciona intestinalis cin-miR-4201-5p mature miRNA
Sequence 1 - GGCAUUGAUAUGUGGGUUGG - 20
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39