miRBase entry: cin-mir-4207

Stem-loop cin-mir-4207


Accession
MI0015764
Description
Ciona intestinalis cin-mir-4207 precursor miRNA


Sequence

5 reads, 3 reads per million, 2 experiments
cgucauaauagcaacuuaacaucaagaacuuguGGCAUUUGGGAUUACAGCG
.(((((((.....................)))))))................

Structure
---------------c       uagcaacuu 
                gucauaa         a
                |||||||         a
                CGGuguu         c
GCGACAUUAGGGUUUA       caagaacua 


Annotation confidence Not enough data
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Genome context
5q: 3939377-3939428 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from cin-mir-4207
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cin-miR-4207-3p

Accession MIMAT0016828
Description Ciona intestinalis cin-miR-4207-3p mature miRNA
Sequence 34 - GGCAUUUGGGAUUACAGCG - 52
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39