Stem-loop cin-mir-4211

Accession

MI0015768

Description

Ciona intestinalis cin-mir-4211 precursor miRNA

Sequence

9 reads, 6 reads per million, 1 experiments

ACAGAAAAGAUUGCUUCGcaguaaguaaauauaacuuauugcuuuuuuuuaaucuuuaugg
.((..((((((((....(((((((((.......))))))))).......)))))))).)).

Structure

A  GA        ---CUUC         aa 
 CA  AAAGAUUG       Gcaguaagu  a
 ||  ||||||||       |||||||||  u
 gu  uuucuaau       cguuauuca  a
g  -a        uuuuuuu         au 

Annotation confidence Not enough data

Genome context

scaffold_2347: 3123-3183 [+]

Mature cin-miR-4211-5p

• Accession: MIMAT0016832
• Description: Ciona intestinalis cin-miR-4211-5p mature miRNA
• Sequence: 1 - ACAGAAAAGAUUGCUUCG - 18
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39