Stem-loop cin-mir-4212

Accession

MI0015769

Description

Ciona intestinalis cin-mir-4212 precursor miRNA

Sequence

55 reads, 88.0 reads per million, 5 experiments

ugcuaugaaucguuuuaaguuuguuuaaaccuuauuuaauaaAGCUAAUGAAUCGUUUCA
((..((((.(((((...(((((..(((((.....)))))..)))))))))).))))..))

Structure

  cu    a     uua     gu     c 
ug  auga ucguu   aguuu  uuaaa c
||  |||| |||||   |||||  ||||| u
AC  UGCU AGUAA   UCGAa  aauuu u
  UU    A     ---     au     a 

Annotation confidence Not enough data

Genome context

ref|NW_004191515.1|: 9439-9498 [+]

Mature cin-miR-4212-3p

• Accession: MIMAT0016833
• Description: Ciona intestinalis cin-miR-4212-3p mature miRNA
• Sequence: 43 - AGCUAAUGAAUCGUUUCA - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39