miRBase entry: cin-mir-4214

Stem-loop cin-mir-4214


Accession
MI0015771
Description
Ciona intestinalis cin-mir-4214 precursor miRNA


Sequence

UAUGUGAAAGUAAUGGUGccgcguuguacagaaaaccuguuuuacaagaaagaacaugcgguaccauaccugcuacgcgug
((((((..(((((((((((((((((((((((.....))))...))).........))))))))))))...)))).))))))

Structure
      AA    ---            ---------   ---    a 
UAUGUG  AGUA   AUGGUGccgcgu         ugu   acag a
||||||  ||||   ||||||||||||         |||   |||| a
gugcgc  ucgu   uaccauggcgua         aca   uguc a
      -a    cca            caagaaaga   uuu    c 


Annotation confidence Not enough data
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Genome context
scaffold_102: 110502-110582 [-]

Database links

Mature cin-miR-4214-5p

Accession MIMAT0016835
Description Ciona intestinalis cin-miR-4214-5p mature miRNA
Sequence 1 - UAUGUGAAAGUAAUGGUG - 18
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39