Stem-loop cin-mir-4216

Accession

MI0015773

Description

Ciona intestinalis cin-mir-4216 precursor miRNA

Sequence

1 reads, 1 reads per million, 1 experiments

AAGCUCUUCCUCAAAAUUUauuagugcugauauacuucuuaucaaauaauauguugguacaaaaaaUAAAUUUGGUAGAAGAGCUU
(((((((((..(.(((((((((.(((((((((((...............)))))))))))....))))))))).)..)))))))))

Structure

         CU A         ---a           cuucuu 
AAGCUCUUC  C AAAUUUauu    gugcugauaua      a
|||||||||  | |||||||||    |||||||||||      u
UUCGAGAAG  G UUUAAAUaa    caugguuguau      c
         AU G         aaaa           aauaaa 

Annotation confidence Not enough data

Genome context

2q: 6528008-6528093 [+]

Mature cin-miR-4216-5p

• Accession: MIMAT0016837
• Description: Ciona intestinalis cin-miR-4216-5p mature miRNA
• Sequence: 1 - AAGCUCUUCCUCAAAAUUU - 19
• Evidence: experimental ; Illumina [1]

Mature cin-miR-4216-3p

• Accession: MIMAT0016838
• Description: Ciona intestinalis cin-miR-4216-3p mature miRNA
• Sequence: 67 - UAAAUUUGGUAGAAGAGCUU - 86
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39