miRBase entry: cin-mir-4219

Stem-loop cin-mir-4219


Accession
MI0015776
Description
Ciona intestinalis cin-mir-4219 precursor miRNA


Sequence

5 reads, 2 reads per million, 2 experiments
CAUGCUGAUUGUGACGUAAuaaguguuuaaacaaagcuuuuguuuccaacauuuugugcggcaauuaugacauc
.(((((((((((..((((..(((((((.(((((((...)))))))..)))))))..))))))))))).).))).

Structure
C   - -       GA    Au       -u       g 
 AUG C UGAUUGU  CGUA  aaguguu  aaacaaa  
 ||| | |||||||  ||||  |||||||  ||||||| c
 uac g auuaacg  gcgu  uuuacaa  uuuguuu  
c   a u       --    gu       cc       u 


Annotation confidence Not enough data
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Genome context
scaffold_89: 504935-505008 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cin-mir-4219
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cin-miR-4219-5p

Accession MIMAT0016841
Description Ciona intestinalis cin-miR-4219-5p mature miRNA
Sequence 1 - CAUGCUGAUUGUGACGUAA - 19
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39