Stem-loop bta-mir-3600

Accession

MI0015943

Description

Bos taurus bta-mir-3600 precursor miRNA

Literature search

5 open access papers mention bta-mir-3600
(5 sentences)

Sequence

3093919 reads, 11053.0 reads per million, 113 experiments

cagagggcaACAGUUCUUCAACUGGCAGCUUuagcugggucaggacauAAAGCUUGCCACUGAAGAACUacugcggcucag
..(((.(((..(((((((((..((((((((((((((......)).).)))))).))))).)))))))))..)))..)))..

Structure

ca   -g   AC         AC     -      - -  gg 
  gag  gca  AGUUCUUCA  UGGCA GCUUua g cu  g
  |||  |||  |||||||||  ||||| |||||| | ||   
  cuc  cgu  UCAAGAAGU  ACCGU CGAAAu c gg  u
ga   gg   ca         -C     U      a a  ac 

Annotation confidence Medium

Genome context

19: 22811570-22811650 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bta-mir-3600

Mature bta-miR-3600-5p

• Accession: MIMAT0016932
• Description: Bos taurus bta-miR-3600-5p mature miRNA
• Sequence: 10 - ACAGUUCUUCAACUGGCAGCUU - 31
• Evidence: experimental ; cloned [1]

Mature bta-miR-3600-3p

• Accession: MIMAT0050963
• Description: Bos taurus bta-miR-3600-3p mature miRNA
• Sequence: 49 - AAAGCUUGCCACUGAAGAACU - 69
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 19765282
   Identification and characterization of miRNAs expressed in the bovine ovary
   Hossain MM, Ghanem N, Hoelker M, Rings F, Phatsara C, Tholen E, Schellander K, Tesfaye D
   BMC Genomics (2009) 10:443