miRBase entry: bta-mir-3578

Stem-loop bta-mir-3578


Accession
MI0015945
Description
Bos taurus bta-mir-3578 precursor miRNA


Sequence

65708 reads, 46.0 reads per million, 85 experiments
uuugguacugaaaAAAGUGUUGUCCGUGAAUGAUUcgucauaaguaaagcGAAUCCACCACGAACAACUUCucuucaaguaccaca
..((((((((((...((.(((((.((((...(((((((..........)))))))...)))).)))))..)).))).)))))))..

Structure
uu       -   aAA  -U     C    AAU       caua 
  ugguacu gaa   AG  GUUGU CGUG   GAUUcgu    a
  ||||||| |||   ||  ||||| ||||   |||||||     
  accauga cuu   uC  CAACA GCAC   CUAAGcg    g
ac       a   --c  UU     A    CAC       aaau 


Annotation confidence Medium
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Genome context
21: 65943520-65943605 [-]
Clustered miRNAs
18 other miRNAs are < 10 kb from bta-mir-3578
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-3578-5p

Accession MIMAT0050965
Description Bos taurus bta-miR-3578-5p mature miRNA
Sequence 14 - AAAGUGUUGUCCGUGAAUGAUU - 35
Evidence experimental
cloned [1]

Mature bta-miR-3578-3p

Accession MIMAT0016934
Description Bos taurus bta-miR-3578-3p mature miRNA
Sequence 51 - GAAUCCACCACGAACAACUUC - 71
Evidence experimental
cloned [1]

References

  1. PubMed ID: 19765282
    Identification and characterization of miRNAs expressed in the bovine ovary
    Hossain MM, Ghanem N, Hoelker M, Rings F, Phatsara C, Tholen E, Schellander K, Tesfaye D
    BMC Genomics (2009) 10:443