Stem-loop bta-mir-409b

Accession

MI0015946

Description

Bos taurus bta-mir-409b precursor miRNA

Literature search

6 open access papers mention bta-mir-409b
(6 sentences)

Sequence

164632 reads, 111.0 reads per million, 93 experiments

ugauaccgaaaAGGGGUUCACCGAGCAACAUUCGucguccaGAUGCAAAGUUGCUCGGGUAACCUcuccccgcguacca
((.(((((...(((((((..(((((((((.((((((.....)))).)).)))))))))..)))))))...)).))).))

Structure

  a   -  aaa       CA         A  -    g 
ug uac cg   AGGGGUU  CCGAGCAAC UU CGuc u
|| ||| ||   |||||||  ||||||||| || |||| c
ac aug gc   ucUCCAA  GGCUCGUUG AA GUAG c
  c   c  ccc       UG         A  C    a 

Annotation confidence Medium

Genome context

21: 65953893-65953971 [-]

Clustered miRNAs

16 other miRNAs are < 10 kb from bta-mir-409b

Mature bta-miR-409b-5p

• Accession: MIMAT0016935
• Description: Bos taurus bta-miR-409b-5p mature miRNA
• Sequence: 12 - AGGGGUUCACCGAGCAACAUUCG - 34
• Evidence: experimental ; cloned [1]

Mature bta-miR-409b-3p

• Accession: MIMAT0050966
• Description: Bos taurus bta-miR-409b-3p mature miRNA
• Sequence: 42 - GAUGCAAAGUUGCUCGGGUAACCU - 65
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 19765282
   Identification and characterization of miRNAs expressed in the bovine ovary
   Hossain MM, Ghanem N, Hoelker M, Rings F, Phatsara C, Tholen E, Schellander K, Tesfaye D
   BMC Genomics (2009) 10:443