miRBase entry: cfa-mir-1837-2

Stem-loop cfa-mir-1837-2


Accession
MI0015961
Description
Canis lupus familiaris cfa-mir-1837-2 precursor miRNA


Sequence

602 reads, 2.0 reads per million, 52 experiments
AUGUGAUGGCUCUUCUGAGAAGuacuucgauggcuccUCUCAGAGGGACUGCGACAUCU
((((..(((.((((((((((.(..((.....))..).)))))))))).)))..))))..

Structure
--    GA   C          A ua  u 
  AUGU  UGG UCUUCUGAGA G  cu c
  ||||  ||| |||||||||| |  || g
  UACA  GUC GGGAGACUCU c  gg a
UC    GC   A          c uc  u 


Annotation confidence Medium
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Genome context
gb|JAAUVH010000082.1|: 106317-106375 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from cfa-mir-1837-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cfa-miR-1837-5p

Accession MIMAT0051741
Description Canis lupus familiaris cfa-miR-1837-5p mature miRNA
Sequence 1 - AUGUGAUGGCUCUUCUGAGAAG - 22
Evidence experimental
Illumina [1]

Mature cfa-miR-1837-3p

Accession MIMAT0006630
Description Canis lupus familiaris cfa-miR-1837-3p mature miRNA
Sequence 38 - UCUCAGAGGGACUGCGACAUCU - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18392026
    Discovering microRNAs from deep sequencing data using miRDeep
    "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
    "Nat Biotechnol (2008) 26:407-415