Stem-loop pab-MIR3693

Accession

MI0016095

Description

Picea abies pab-MIR3693 precursor miRNA

Literature search

1 open access papers mention pab-MIR3693
(1 sentences)

Sequence

1252 reads, 162.0 reads per million, 78 experiments

gcccuucaAGAGGGUGCUCAUGAACUGCUCauagguggcggcugcacagaggccuuacucaaacacaagagcccaaauggagcaaacuugcaucUAUGAGCAGCUCAUGACAACCuucugaagggc
((((((((.((((((..((((((.(((((((((((((...(((.((....((((((..........))).)))....)).))).......))))))))))))).))))))..))))))))))))))

Structure

        A      GC      A             ----gcg   g  caga   -   acuc 
gcccuuca GAGGGU  UCAUGA CUGCUCauaggug       gcu ca    ggc cuu    a
|||||||| ||||||  |||||| |||||||||||||       ||| ||    ||| |||     
cgggaagu cuuCCA  AGUACU GACGAGUAUcuac       cga gu    ccg gaa    a
        -      AC      C             guucaaa   g  aaac   a   caca 

Annotation confidence Medium

Genome context

MA_10429656: 4006-4131 [+]

Mature pab-miR3693-5p

• Accession: MIMAT0018125
• Description: Picea abies pab-miR3693-5p mature miRNA
• Sequence: 9 - AGAGGGUGCUCAUGAACUGCUC - 30
• Evidence: experimental ; cloned [1]

Mature pab-miR3693-3p

• Accession: MIMAT0057415
• Description: Picea abies pab-miR3693-3p mature miRNA
• Sequence: 95 - UAUGAGCAGCUCAUGACAACC - 115
• Evidence: experimental ; unknown

References

1. PubMed ID: 20561211
   MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce
   "Yakovlev IA, Fossdal CG, Johnsen O"
   "New Phytol (2010) 187:1154-1169