Stem-loop pab-MIR3695d

Accession

MI0016097

Description

Picea abies pab-MIR3695d precursor miRNA

Sequence

11890 reads, 306.0 reads per million, 79 experiments

agcccUCACUGUCGCCUGGUCGUUGUgggggguugaugaucguuacuagaaaagugaaguuuucUAGUAAUGGUCAUCAAGCUCUuacaacggccaggcgacauugcggacu
...((.((.((((((((((((((((((((((.(((((((((((((((((((((......))))))))))))))))))))).)))))))))))))))))))))).)).))...

Structure

agc  U  C                      g                     gu 
   cc CA UGUCGCCUGGUCGUUGUggggg uugaugaucguuacuagaaaa  g
   || || |||||||||||||||||||||| |||||||||||||||||||||   
   gg gu acagcggaccggcaacauUCUC AACUACUGGUAAUGAUcuuuu  a
uca  c  u                      G                     ga 

Annotation confidence Medium

Genome context

MA_8209784: 1527-1638 [+]

Mature pab-miR3695d-5p

• Accession: MIMAT0018127
• Description: Picea abies pab-miR3695d-5p mature miRNA
• Sequence: 6 - UCACUGUCGCCUGGUCGUUGU - 26
• Evidence: experimental ; cloned [1], Illumina [2]

Mature pab-miR3695d-3p

• Accession: MIMAT0037382
• Description: Picea abies pab-miR3695d-3p mature miRNA
• Sequence: 65 - UAGUAAUGGUCAUCAAGCUCU - 85
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20561211
   MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce
   "Yakovlev IA, Fossdal CG, Johnsen O"
   "New Phytol (2010) 187:1154-1169


2. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918