miRBase entry: pab-MIR3696

Stem-loop pab-MIR3696


Accession
MI0016098
Description
Picea abies pab-MIR3696 precursor miRNA


Sequence

31636 reads, 1052.0 reads per million, 92 experiments
guuuuCGAGCUACCAUCGUGACGAUCcaucaauacuaccgggaauucaacauccagaaaggaauucccacuucucauagcgauuaggcgcGGGCUAUUAAUGGAUGGGUUAaaacgauggacgcuca
......((((..(((((((...((((((((.........((((((((.............)))))))).......(((((............))))).....))))))))...)))))))..)))).

Structure
guuuuC    UA       GAC        aauacuaccgggaauucaacauccagaaaggaauucccacuucuc     gauua 
      GAGC  CCAUCGU   GAUCcauc                                             auagc     g
      ||||  |||||||   ||||||||                                             |||||      
      cucg  gguagca   UUGGGUAG                                             UAUCG     g
-----a    ca       aaA        ----------------------------------------GUAAU     GGcgc 


Annotation confidence Low
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Genome context
MA_211607: 3931-4057 [-]

Database links

Mature pab-miR3696-5p

Accession MIMAT0018128
Description Picea abies pab-miR3696-5p mature miRNA
Sequence 6 - CGAGCUACCAUCGUGACGAUC - 26
Evidence experimental
cloned [1]

Mature pab-miR3696-3p

Accession MIMAT0057417
Description Picea abies pab-miR3696-3p mature miRNA
Sequence 91 - GGGCUAUUAAUGGAUGGGUUA - 111
Evidence experimental
unknown

References

  1. PubMed ID: 20561211
    MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce
    "Yakovlev IA, Fossdal CG, Johnsen O"
    "New Phytol (2010) 187:1154-1169