Stem-loop pab-MIR3700

Accession

MI0016102

Description

Picea abies pab-MIR3700 precursor miRNA

Sequence

5746 reads, 227.0 reads per million, 96 experiments

ggaaggauuGAUCUUGAGAUGGGUACUCGUgguguuauggccaccauaaGACGCCCAAAACUGAAGGUCAuaaauacc
((......(((((((.((.(((((.((.((((((.......)))))).))..)))))...)).)))))))......))

Structure

  aaggau       G  --A     -A  C      uu 
gg      uGAUCUU AG   UGGGU  CU GUggug  a
||      ||||||| ||   |||||  || ||||||  u
cc      ACUGGAA UC   ACCCG  Ga uaccac  g
  auaaau       G  AAA     CA  a      cg 

Annotation confidence Medium

Genome context

MA_103565: 2506-2583 [+]

Mature pab-miR3700-5p

• Accession: MIMAT0057420
• Description: Picea abies pab-miR3700-5p mature miRNA
• Sequence: 10 - GAUCUUGAGAUGGGUACUCGU - 30
• Evidence: experimental ; unknown

Mature pab-miR3700-3p

• Accession: MIMAT0018132
• Description: Picea abies pab-miR3700-3p mature miRNA
• Sequence: 50 - GACGCCCAAAACUGAAGGUCA - 70
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 20561211
   MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce
   "Yakovlev IA, Fossdal CG, Johnsen O"
   "New Phytol (2010) 187:1154-1169