Stem-loop pab-MIR3701b

Accession

MI0016103

Description

Picea abies pab-MIR3701b precursor miRNA

Literature search

1 open access papers mention pab-MIR3701b
(4 sentences)

Sequence

ugccacagaCGAAGGGUAAGCGUUGUUUGGCagaagaguuuucucuguugcagaacauagaggauuugccaaaauuaucgucaucaaaugaaaaggcuccaguagcuuuauugcaauuuguuuggcaauagccucuauguucuuugaauguaaaaacucuucucuUAAACAAUGCCCACCCUUCAUCucuggaca
..(((.(((.(((((((..(((((((((((.(((((((((((..(..(((.((((((((((((..((((((((...........(((((...((((((.....))))))......)))))))))))))...)))))))))))).)))..)..))))))))))).)))))))))))..))))))).))).)))...

Structure

-ug   c   C       AA           C           cu ug   c            -au        auuaucgucau     ---gaa      c 
   cca aga GAAGGGU  GCGUUGUUUGG agaagaguuuu  c  uug agaacauagagg   uugccaaa           caaau      aaggcu c
   ||| ||| |||||||  ||||||||||| |||||||||||  |  ||| ||||||||||||   ||||||||           |||||      |||||| a
   ggu uCU CUUCCCA  CGUAACAAAUu ucuucucaaaa  g  agu ucuuguaucucc   aacgguuu           guuua      uuucga g
aca   c   A       CC           c           au ua   u            gau        -----------     acguua      u 

Annotation confidence Not enough data

Genome context

MA_10436756: 14222-14416 [-]

Mature pab-miR3701b-3p

• Accession: MIMAT0018133
• Description: Picea abies pab-miR3701b-3p mature miRNA
• Sequence: 166 - UAAACAAUGCCCACCCUUCAUC - 187
• Evidence: experimental ; cloned [1], Illumina [2]

Mature pab-miR3701b-5p

• Accession: MIMAT0037383
• Description: Picea abies pab-miR3701b-5p mature miRNA
• Sequence: 10 - CGAAGGGUAAGCGUUGUUUGGC - 31
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20561211
   MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce
   "Yakovlev IA, Fossdal CG, Johnsen O"
   "New Phytol (2010) 187:1154-1169


2. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918