Stem-loop pab-MIR3704

Accession

MI0016106

Description

Picea abies pab-MIR3704 precursor miRNA

Literature search

1 open access papers mention pab-MIR3704
(1 sentences)

Sequence

74266 reads, 3154.0 reads per million, 54 experiments

aaggcaauaGGUCUAGGUGGAGUUGGAAAAAcugucacaaugccuauaucacaucagaucagaugaaaucaugagugacugcaugGGUUUUUCCUCUCCUCCCAGAcccaguggccuu
(((((....(((((.((.((((..(((((((((....((.(((.....((((.((((((........))).)))))))..)))))))))))))).)))).)).))))).....)))))

Structure

     -aaua     A  U    UU         guca  a   cuaua    a   -   cag 
aaggc     GGUCU GG GGAG  GGAAAAAcu    ca ugc     ucac uca gau   a
|||||     ||||| || ||||  |||||||||    || |||     |||| ||| |||    
uuccg     ccAGA CC CCUC  CCUUUUUGG    gu acg     agug agu cua   u
     gugac     C  U    -U         ----  -   ---uc    -   a   aag 

Annotation confidence Medium

Genome context

MA_10207503: 4137-4254 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from pab-MIR3704

Mature pab-miR3704-5p

• Accession: MIMAT0018136
• Description: Picea abies pab-miR3704-5p mature miRNA
• Sequence: 10 - GGUCUAGGUGGAGUUGGAAAAA - 31
• Evidence: experimental ; cloned [1]

Mature pab-miR3704-3p

• Accession: MIMAT0057423
• Description: Picea abies pab-miR3704-3p mature miRNA
• Sequence: 86 - GGUUUUUCCUCUCCUCCCAGA - 106
• Evidence: experimental ; unknown

References

1. PubMed ID: 20561211
   MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce
   "Yakovlev IA, Fossdal CG, Johnsen O"
   "New Phytol (2010) 187:1154-1169