Stem-loop pab-MIR3705

Accession

MI0016107

Description

Picea abies pab-MIR3705 precursor miRNA

Literature search

2 open access papers mention pab-MIR3705
(2 sentences)

Sequence

1630 reads, 110.0 reads per million, 78 experiments

uuuugcagacGUAAGUGGUUAUGAUCUGGACggcggcaaguuuaacgggugagaccuccaacucccucucuauggauagaauauauUAUAUAUGAUGCUUUGCCUaugauuucgauuauuuauuuguuuguuuga
....((((((((((((((((..((((.....(((((((........(((.(((........)))))).((((....))))(((((...)))))..))))..)))...))))..))))))))))..))))))....

Structure

uuuu      --          AU    UGGAC   --    aguuuaacgggugagaccuccaacucccucucuauggauaga     u 
    gcagac  GUAAGUGGUU  GAUC     ggc  ggca                                          auaua  
    ||||||  ||||||||||  ||||     |||  ||||                                          ||||| U
    uguuug  uauuuauuag  uuag     CCG  UCGU                                          UAUAU  
aguu      uu          cu    --uaU   UU    ----------------------------------------AG     A 

Annotation confidence Medium

Genome context

MA_10430493: 1449-1583 [-]

Mature pab-miR3705-5p

• Accession: MIMAT0018137
• Description: Picea abies pab-miR3705-5p mature miRNA
• Sequence: 11 - GUAAGUGGUUAUGAUCUGGAC - 31
• Evidence: experimental ; cloned [1]

Mature pab-miR3705-3p

• Accession: MIMAT0057424
• Description: Picea abies pab-miR3705-3p mature miRNA
• Sequence: 87 - UAUAUAUGAUGCUUUGCCU - 105
• Evidence: experimental ; unknown

References

1. PubMed ID: 20561211
   MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce
   "Yakovlev IA, Fossdal CG, Johnsen O"
   "New Phytol (2010) 187:1154-1169