miRBase entry: pab-MIR3707

Stem-loop pab-MIR3707


Accession
MI0016109
Description
Picea abies pab-MIR3707 precursor miRNA


Sequence

55393 reads, 1599.0 reads per million, 102 experiments
aagccacauccaguaccaggauuuauagauuugggagAUUGACUUAUAAUGACAUGUGAUGAUCUGCCAUUAUCCUUGAaaguauuuggagcgcuug
((((....((((((((((((((.........(((.(((((...(((((......))))).))))).)))..)))).))...))).)))))..)))).

Structure
-    caca     -   ---  -    uuauagauu   g     GAC     AU 
 aagc    uccag uac   ca ggau         ugg agAUU   UUAUA  G
 ||||    ||||| |||   || ||||         ||| |||||   |||||   
 uucg    agguu aug   GU CCUA         ACC UCUAG   AGUGU  A
g    --cg     u   aaA  U    -------UU   G     --U     AC 


Annotation confidence Medium
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Genome context
MA_818265: 2245-2341 [+]

Database links

Mature pab-miR3707-5p

Accession MIMAT0057426
Description Picea abies pab-miR3707-5p mature miRNA
Sequence 38 - AUUGACUUAUAAUGACAUGUG - 58
Evidence experimental
unknown

Mature pab-miR3707-3p

Accession MIMAT0018139
Description Picea abies pab-miR3707-3p mature miRNA
Sequence 59 - AUGAUCUGCCAUUAUCCUUGA - 79
Evidence experimental
cloned [1]

References

  1. PubMed ID: 20561211
    MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce
    "Yakovlev IA, Fossdal CG, Johnsen O"
    "New Phytol (2010) 187:1154-1169