Stem-loop pab-MIR3708

Accession

MI0016110

Description

Picea abies pab-MIR3708 precursor miRNA

Literature search

1 open access papers mention pab-MIR3708
(9 sentences)

Sequence

6620 reads, 527.0 reads per million, 102 experiments

guccacgaaucuggggcgggAAGUGUUGUGAUUCUGGUUGAUaacuugcugaaucauguaUCACACAACAUUGCUCGUACAcgccagccgagggc
((((.((...((((.(((((.(((((((((((.((((((.(........).))))).).))))))..))))).))))....).)))).)).))))

Structure

    a  aau    g ----    A     --      U -     G Uaa 
gucc cg   cugg g    cggg AGUGU  UGUGAU C UGGUU A   c
|||| ||   |||| |    |||| |||||  |||||| | ||||| |    
cggg gc   gacc c    GCUC UUACA  ACACUa g acuaa u   u
    a  --c    g ACAU    G     AC      u u     g cgu 

Annotation confidence Medium

Genome context

MA_19990: 28425-28519 [-]

Mature pab-miR3708-5p

• Accession: MIMAT0057427
• Description: Picea abies pab-miR3708-5p mature miRNA
• Sequence: 21 - AAGUGUUGUGAUUCUGGUUGAU - 42
• Evidence: experimental ; unknown

Mature pab-miR3708-3p

• Accession: MIMAT0018140
• Description: Picea abies pab-miR3708-3p mature miRNA
• Sequence: 61 - UCACACAACAUUGCUCGUACA - 81
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 20561211
   MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce
   "Yakovlev IA, Fossdal CG, Johnsen O"
   "New Phytol (2010) 187:1154-1169