Stem-loop pab-MIR3709b

Accession

MI0016112

Description

Picea abies pab-MIR3709b precursor miRNA

Sequence

56777 reads, 2442.0 reads per million, 102 experiments

aaauccaagaacUUUAAAUGCCUUAAAUUCCCGAuaaauucaggcgaugaccgaauauauuucGGGAUUUAAAGCAUUUGAAGUUcuggauuuauc
(((((((.(((((((((((((.((((((.(((((...((((.((......)))))).....))))))))))).))))))))))))))))))))...

Structure

---       a             C      U     --uaa    a  cg 
   aaaucca gaacUUUAAAUGC UUAAAU CCCGA     auuc gg  a
   ||||||| ||||||||||||| |||||| |||||     |||| ||   
   uuuaggu cUUGAAGUUUACG AAUUUA GGGcu     uaag cc  u
cua       -             A      -     uuaua    -  ag 

Annotation confidence High

Genome context

MA_111392: 2484-2579 [-]

Mature pab-miR3709b-5p

• Accession: MIMAT0018142
• Description: Picea abies pab-miR3709b-5p mature miRNA
• Sequence: 13 - UUUAAAUGCCUUAAAUUCCCGA - 34
• Evidence: experimental ; cloned [1]

Mature pab-miR3709b-3p

• Accession: MIMAT0057428
• Description: Picea abies pab-miR3709b-3p mature miRNA
• Sequence: 64 - GGGAUUUAAAGCAUUUGAAGUU - 85
• Evidence: experimental ; unknown

References

1. PubMed ID: 20561211
   MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce
   "Yakovlev IA, Fossdal CG, Johnsen O"
   "New Phytol (2010) 187:1154-1169