Stem-loop pab-MIR3710

Accession

MI0016113

Description

Picea abies pab-MIR3710 precursor miRNA

Literature search

2 open access papers mention pab-MIR3710
(5 sentences)

Sequence

57871 reads, 6553.0 reads per million, 102 experiments

agacgcuuccagacucggUUGGGAACCUGACGGGCCUCcaaagucuuacccugaacaguugcuuggcucugcagacgcuuccagacucuguUGGGAACCUGACGGGCCUCCAaagucuugucaugauccuuugc
.((((.....(((((...(((((..((((.((((..((((((((((......(((..(((((........))).))..))).)))))...)))))..)))).))))..))))))))))))))............

Structure

-----------a    cuucc     cgg     AA    A    CC     ---     uacccu   ca  -   uug 
            gacg     agacu   UUGGG  CCUG CGGG  UCcaa   agucu      gaa  gu ugc   g
            ||||     |||||   |||||  |||| ||||  |||||   |||||      |||  || |||    
            cugu     ucuga   aACCU  GGGC GUCC  GGGUu   ucaga      cuu  ca acg   c
cguuuccuagua    -----     ---     CC    A    AA     guc     -----c   cg  g   ucu 

Annotation confidence Low

Genome context

MA_10042710: 1750-1883 [-]

Mature pab-miR3710-5p

• Accession: MIMAT0057429
• Description: Picea abies pab-miR3710-5p mature miRNA
• Sequence: 19 - UUGGGAACCUGACGGGCCUC - 38
• Evidence: experimental ; unknown

Mature pab-miR3710-3p

• Accession: MIMAT0018143
• Description: Picea abies pab-miR3710-3p mature miRNA
• Sequence: 92 - UGGGAACCUGACGGGCCUCCA - 112
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 20561211
   MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce
   "Yakovlev IA, Fossdal CG, Johnsen O"
   "New Phytol (2010) 187:1154-1169