Stem-loop pab-MIR160a

Accession

MI0016116

Description

Picea abies pab-MIR160a precursor miRNA

Literature search

1 open access papers mention pab-MIR160a
(1 sentences)

Sequence

2075 reads, 132.0 reads per million, 88 experiments

aaagguugaugugUGCCUGGCUCCCUGUAUGCCAcauacaaggcccagucauauguugauuggcuucauaggugGCUUACAAGGAGCCAAGCAUacguuuucuuac
..(((..(((((((((.(((((((.((((.(((((.((..(((((.(((((.....))))))))))..)).))))).)))).))))))).)))))))))..)))..

Structure

aa   uu         C       C    U     a  ca     c     u 
  agg  gaugugUGC UGGCUCC UGUA GCCAc ua  aggcc aguca a
  |||  ||||||||| ||||||| |||| ||||| ||  ||||| ||||| u
  uuc  uugcaUACG ACCGAGG ACAU CGgug au  uucgg uuagu g
ca   uu         A       A    U     g  ac     -     u 

Annotation confidence High

Genome context

MA_10961: 17646-17751 [-]

Mature pab-miR160a-5p

• Accession: MIMAT0018146
• Description: Picea abies pab-miR160a-5p mature miRNA
• Sequence: 14 - UGCCUGGCUCCCUGUAUGCCA - 34
• Evidence: experimental ; cloned [1]

Mature pab-miR160a-3p

• Accession: MIMAT0057431
• Description: Picea abies pab-miR160a-3p mature miRNA
• Sequence: 75 - GCUUACAAGGAGCCAAGCAU - 94
• Evidence: experimental ; unknown

References

1. PubMed ID: 20561211
   MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce
   "Yakovlev IA, Fossdal CG, Johnsen O"
   "New Phytol (2010) 187:1154-1169