Stem-loop pab-MIR160b

Accession

MI0016117

Description

Picea abies pab-MIR160b precursor miRNA

Literature search

1 open access papers mention pab-MIR160b
(1 sentences)

Sequence

2380 reads, 135.0 reads per million, 88 experiments

guugggggcaccgcugaucUGCCUGGCUCCCUGUAUGCCAucugcguugcuuaucaagagcgggauaugccucacaguugGCAUAGAGAGAGCCAAGCAGAacugcuguuucuagc
((((((((((..((.(.(((((.((((((.((.(((((((.(((.(..((.((((........)))).))..).))).))))))).)).)))))).))))).).))))))))))))

Structure

          cc  u a     C      C  G       u   c uu  u    aag 
guugggggca  gc g ucUGC UGGCUC CU UAUGCCA cug g  gc uauc   a
||||||||||  || | ||||| |||||| || ||||||| ||| |  || ||||    
cgaucuuugu  cg c AGACG ACCGAG GA AUACGgu gac c  cg auag   g
          --  u a     A      A  G       u   a uc  u    ggc 

Annotation confidence High

Genome context

MA_790319: 3840-3955 [-]

Mature pab-miR160b-5p

• Accession: MIMAT0018147
• Description: Picea abies pab-miR160b-5p mature miRNA
• Sequence: 20 - UGCCUGGCUCCCUGUAUGCCA - 40
• Evidence: experimental ; cloned [1]

Mature pab-miR160b-3p

• Accession: MIMAT0057432
• Description: Picea abies pab-miR160b-3p mature miRNA
• Sequence: 81 - GCAUAGAGAGAGCCAAGCAGA - 101
• Evidence: experimental ; unknown

References

1. PubMed ID: 20561211
   MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce
   "Yakovlev IA, Fossdal CG, Johnsen O"
   "New Phytol (2010) 187:1154-1169