Stem-loop pab-MIR166a

Accession

MI0016118

Description

Picea abies pab-MIR166a precursor miRNA

Literature search

1 open access papers mention pab-MIR166a
(3 sentences)

Sequence

715598 reads, 22094.0 reads per million, 102 experiments

ggagaucuugguugaggGGAAUGCUAUCUGGCUCGAGGucgccuuccuucgucgUCGGACCAGGCUUCAUUCCUCucuacuuggacuucc
((((.(((.(((.((((((((((...(((((.((((.(.((........)).).)))).)))))...)))))))))).))).))).))))

Structure

    a   u   u          CUA     C    G u  ccu 
ggag ucu ggu gaggGGAAUG   UCUGG UCGA G cg   u
|||| ||| ||| ||||||||||   ||||| |||| | ||    
ccuu agg uca cuCUCCUUAC   GGACC GGCU c gc   c
    c   u   u          UUC     A    g u  uuc 

Annotation confidence High

Genome context

MA_42952: 13865-13954 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pab-MIR166a

Mature pab-miR166a-5p

• Accession: MIMAT0057433
• Description: Picea abies pab-miR166a-5p mature miRNA
• Sequence: 18 - GGAAUGCUAUCUGGCUCGAGG - 38
• Evidence: experimental ; unknown

Mature pab-miR166a-3p

• Accession: MIMAT0018148
• Description: Picea abies pab-miR166a-3p mature miRNA
• Sequence: 55 - UCGGACCAGGCUUCAUUCCUC - 75
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 20561211
   MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce
   "Yakovlev IA, Fossdal CG, Johnsen O"
   "New Phytol (2010) 187:1154-1169