Stem-loop pab-MIR395

Accession

MI0016121

Description

Picea abies pab-MIR395 precursor miRNA

Literature search

1 open access papers mention pab-MIR395
(3 sentences)

Sequence

469 reads, 58.0 reads per million, 42 experiments

cucacagcugguucucaaugccgggaGUUCCUUCAAUCACUUCGCCgaauccgaaagcauuuugCUGAAGUGUUUGGAGGAACUUcgggcgucacugaacugc
......((.(((((...(((((.(((((((((((((.((((((((.((((.(....).)))).)).)))))).))))))))))))).)))))....)))))))

Structure

cucaca  u     -uca     g             U      -  C    c g 
      gc gguuc    augcc ggaGUUCCUUCAA CACUUC GC gaau c a
      || |||||    ||||| ||||||||||||| |||||| || |||| |  
      cg ucaag    ugcgg cUUCAAGGAGGUU GUGAAG Cg uuua g a
------  -     ucac     g             U      U  u    c a 

Annotation confidence Medium

Genome context

MA_427472: 246-348 [-]

Mature pab-miR395-5p

• Accession: MIMAT0057434
• Description: Picea abies pab-miR395-5p mature miRNA
• Sequence: 27 - GUUCCUUCAAUCACUUCGCC - 46
• Evidence: experimental ; unknown

Mature pab-miR395-3p

• Accession: MIMAT0018151
• Description: Picea abies pab-miR395-3p mature miRNA
• Sequence: 65 - CUGAAGUGUUUGGAGGAACUU - 85
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 20561211
   MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce
   "Yakovlev IA, Fossdal CG, Johnsen O"
   "New Phytol (2010) 187:1154-1169