Stem-loop pab-MIR396c

Accession

MI0016124

Description

Picea abies pab-MIR396c precursor miRNA

Literature search

1 open access papers mention pab-MIR396c
(5 sentences)

Sequence

624293 reads, 13870.0 reads per million, 101 experiments

aagccggagaaugcucucauauuuUUCCACGGCUUUCUUGAACUUcccgaucgggaguguuggcgacagaucgcaccgcuaacagauccgcauacgaagCUCAAGAAAGCCGUGGGAAgaauauuaaagggauucaauuuuau
........((((.((((.(((((((((((((((((((((((.((((.....((((..((((((((...........))))))))..)))).....)))).))))))))))))).))))))))))...))))))))........

Structure

aagccgga    g    --c          -             A    ccgau    ag        acag 
        gaau cucu   auauuuUUCC ACGGCUUUCUUGA CUUc     cggg  uguuggcg    a
        |||| ||||   |||||||||| ||||||||||||| ||||     ||||  ||||||||    u
        cuua ggga   uauaagAAGG UGCCGAAAGAACU gaag     gccu  acaaucgc    c
uauuuuaa    -    aau          G             C    cauac    ag        cacg 

Annotation confidence High

Genome context

MA_10434401: 12107-12249 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pab-MIR396c

Mature pab-miR396c-5p

• Accession: MIMAT0018154
• Description: Picea abies pab-miR396c-5p mature miRNA
• Sequence: 25 - UUCCACGGCUUUCUUGAACUU - 45
• Evidence: experimental ; cloned [1]

Mature pab-miR396c-3p

• Accession: MIMAT0057436
• Description: Picea abies pab-miR396c-3p mature miRNA
• Sequence: 100 - CUCAAGAAAGCCGUGGGAA - 118
• Evidence: experimental ; unknown

References

1. PubMed ID: 20561211
   MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce
   "Yakovlev IA, Fossdal CG, Johnsen O"
   "New Phytol (2010) 187:1154-1169