Stem-loop pab-MIR397b

Accession

MI0016125

Description

Picea abies pab-MIR397b precursor miRNA

Literature search

1 open access papers mention pab-MIR397b
(2 sentences)

Sequence

5358 reads, 477.0 reads per million, 94 experiments

agccguggcaaccacauCAUUGAGUGCAGCGUUGACGAuagaaauuccaccaauagauuugauaauaucuaucuauuuguggaaugccauugauauuGUUAACCCUGCACUCAAUAGUauguuugccaauggcu
(((((((((((.((.((.(((((((((((.((((((((((...(((((((.(((((((..(((...))).))))))).)))))))........)))))))))).))))))))))).)).)).))))).))))))

Structure

      -     c  c  C           C          -----gaa       c       uu   a 
agccgu ggcaa ca au AUUGAGUGCAG GUUGACGAua        auuccac aauagau  gau  
|||||| ||||| || || ||||||||||| ||||||||||        ||||||| |||||||  ||| a
ucggua ccguu gu UG UAACUCACGUC CAAUUGuuau        uaaggug uuaucua  cua  
      a     u  a  A           C          aguuaccg       u       -u   u 

Annotation confidence High

Genome context

MA_11748: 25993-26126 [-]

Mature pab-miR397b-5p

• Accession: MIMAT0018155
• Description: Picea abies pab-miR397b-5p mature miRNA
• Sequence: 18 - CAUUGAGUGCAGCGUUGACGA - 38
• Evidence: experimental ; cloned [1]

Mature pab-miR397b-3p

• Accession: MIMAT0057437
• Description: Picea abies pab-miR397b-3p mature miRNA
• Sequence: 98 - GUUAACCCUGCACUCAAUAGU - 118
• Evidence: experimental ; unknown

References

1. PubMed ID: 20561211
   MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce
   "Yakovlev IA, Fossdal CG, Johnsen O"
   "New Phytol (2010) 187:1154-1169