Stem-loop pab-MIR482a

Accession

MI0016126

Description

Picea abies pab-MIR482a precursor miRNA

Literature search

1 open access papers mention pab-MIR482a
(5 sentences)

Sequence

228826 reads, 7055.0 reads per million, 102 experiments

uuggaggAGUGGAAGGAUAGGGUAAGACUgcgguuaagugagacugcuucaauaauucuuugcucuaaucucaccagUCUUCCCUACUCCUCCCAUUCCuguugccuucaucacaguu
....((((((((.(((((((((.(((((((.......((((((......(((.......)))......)))))))))))))))))).)))).))))))))..................

Structure

--------------uugg        A    -     U       cgguuaa      cugcuu   ua 
                  aggAGUGG AGGA UAGGG AAGACUg       gugaga      caa  a
                  |||||||| |||| ||||| |||||||       ||||||      |||  u
                  uCCUUACC UCCU AUCCC UUCUgac       cacucu      guu  u
uugacacuacuuccguug        C    C     -       -------      aaucuc   uc 

Annotation confidence High

Genome context

MA_10207503: 3934-4051 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from pab-MIR482a

Mature pab-miR482a-5p

• Accession: MIMAT0057438
• Description: Picea abies pab-miR482a-5p mature miRNA
• Sequence: 8 - AGUGGAAGGAUAGGGUAAGACU - 29
• Evidence: experimental ; unknown

Mature pab-miR482a-3p

• Accession: MIMAT0018156
• Description: Picea abies pab-miR482a-3p mature miRNA
• Sequence: 78 - UCUUCCCUACUCCUCCCAUUCC - 99
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 20561211
   MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce
   "Yakovlev IA, Fossdal CG, Johnsen O"
   "New Phytol (2010) 187:1154-1169