Stem-loop pab-MIR482b

Accession

MI0016127

Description

Picea abies pab-MIR482b precursor miRNA

Literature search

1 open access papers mention pab-MIR482b
(5 sentences)

Sequence

327725 reads, 8347.0 reads per million, 102 experiments

auguggauggaagucuugaGGAUUGGGAGGAUAGGAGAAGGcuguuugcuuaauuaucaguugaaaccugauuagUCUUCCCUAUUCCUCCCAUUCCuauugccuccaucacacaucccuu
(((((((((((.((....((((.((((((((((((.((((((((...........(((((.......))))))))))))))))).)))))))).))))...)).)))))).))))).....

Structure

-----     -      a  cuug    U        -    A        uuugcuuaauu     uu 
     augug gaugga gu    aGGA UGGGAGGA UAGG GAAGGcug           aucag  g
     ||||| |||||| ||    |||| |||||||| |||| ||||||||           |||||  a
     uacac cuaccu cg    uCCU ACCCUCCU AUCC CUUCUgau           uaguc  a
uuccc     a      c  -uua    U        U    -        -----------     ca 

Annotation confidence High

Genome context

MA_75889: 12386-12506 [-]

Mature pab-miR482b-5p

• Accession: MIMAT0057439
• Description: Picea abies pab-miR482b-5p mature miRNA
• Sequence: 20 - GGAUUGGGAGGAUAGGAGAAGG - 41
• Evidence: experimental ; unknown

Mature pab-miR482b-3p

• Accession: MIMAT0018157
• Description: Picea abies pab-miR482b-3p mature miRNA
• Sequence: 76 - UCUUCCCUAUUCCUCCCAUUCC - 97
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 20561211
   MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce
   "Yakovlev IA, Fossdal CG, Johnsen O"
   "New Phytol (2010) 187:1154-1169