Stem-loop pab-MIR482c

Accession

MI0016128

Description

Picea abies pab-MIR482c precursor miRNA

Literature search

1 open access papers mention pab-MIR482c
(5 sentences)

Sequence

282014 reads, 7699.0 reads per million, 102 experiments

ugagaagggaauggauguguuuuguggauggaagucuugaggAGUGGGAGCAGAGGAUAAGACUgcugcuuugaauauuaccagUCUUUCCUACUCCUCCCAUUCCuauugccuucaccacacaucccuucccaacg
......(((((.((((((((...(((((.((.(((....(((((((((((.((((((.(((((((................))))))))))).)).)))))))))))))).))))))).)))))))).)))))....

Structure

ugagaa     u        uuu     u  a   cuug           C  -    U       cugcuuu 
      gggaa ggaugugu   gugga gg agu    aggAGUGGGAG AG AGGA AAGACUg       g
      ||||| ||||||||   ||||| || |||    ||||||||||| || |||| |||||||        
      cccuu ccuacaca   cacuu cc uua    uCCUUACCCUC UC UCCU UUCUgac       a
--gcaa     c        --c     -  g   ----           C  A    -       cauuaua 

Annotation confidence High

Genome context

MA_945007: 7767-7903 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pab-MIR482c

Mature pab-miR482c-5p

• Accession: MIMAT0057440
• Description: Picea abies pab-miR482c-5p mature miRNA
• Sequence: 43 - AGUGGGAGCAGAGGAUAAGACU - 64
• Evidence: experimental ; unknown

Mature pab-miR482c-3p

• Accession: MIMAT0018158
• Description: Picea abies pab-miR482c-3p mature miRNA
• Sequence: 85 - UCUUUCCUACUCCUCCCAUUCC - 106
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 20561211
   MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce
   "Yakovlev IA, Fossdal CG, Johnsen O"
   "New Phytol (2010) 187:1154-1169