Stem-loop pab-MIR951

Accession

MI0016131

Description

Picea abies pab-MIR951 precursor miRNA

Literature search

2 open access papers mention pab-MIR951
(6 sentences)

Sequence

494084 reads, 21305.0 reads per million, 102 experiments

aggaagcgaaggUGUUCUUGACGUCUGGACCACGugguuuacuuuaagauuugcaguaauaacccaucaacuaccgCGGUCCAGUCGUCAAGAACACCUuugcuuuca
.((((((((((((((((((((((.(((((((.(((((((((((.(((...))).))))..........))))).)).))))))).)))))))))))))))))))))).

Structure

a                      U       A  -     ----------    u   g 
 ggaagcgaaggUGUUCUUGACG CUGGACC CG ugguu          uacu uaa  
 |||||||||||||||||||||| ||||||| || |||||          |||| ||| a
 cuuucguuUCCACAAGAACUGC GACCUGG gc aucaa          auga guu  
a                      U       C  c     cuacccaaua    c   u 

Annotation confidence High

Genome context

MA_17259: 28800-28907 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pab-MIR951

Mature pab-miR951-5p

• Accession: MIMAT0018161
• Description: Picea abies pab-miR951-5p mature miRNA
• Sequence: 13 - UGUUCUUGACGUCUGGACCACG - 34
• Evidence: experimental ; cloned [1]

Mature pab-miR951-3p

• Accession: MIMAT0057443
• Description: Picea abies pab-miR951-3p mature miRNA
• Sequence: 77 - CGGUCCAGUCGUCAAGAACACCU - 99
• Evidence: experimental ; unknown

References

1. PubMed ID: 20561211
   MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce
   "Yakovlev IA, Fossdal CG, Johnsen O"
   "New Phytol (2010) 187:1154-1169