Stem-loop pab-MIR1311a

Accession

MI0016132

Description

Picea abies pab-MIR1311a precursor miRNA

Literature search

1 open access papers mention pab-MIR1311a
(3 sentences)

Sequence

164727 reads, 7649.0 reads per million, 102 experiments

gggcuugguaggauuaggCGCACUGGCAUAACUCUGACCauaguuuauggUCAGAGUUUUGCCAGUUCCGCCcauuccuauugugccu
((((..(((((((...((((.(((((((.(((((((((((((...))))))))))))).)))))))..))))...)))))))..))))

Structure

    uu       uua    -C       U             g 
gggc  gguagga   ggCG  ACUGGCA AACUCUGACCaua  
||||  |||||||   ||||  ||||||| ||||||||||||| u
uccg  uuauccu   CCGC  UGACCGU UUGAGACUgguau  
    ug       uac    CU       U             u 

Annotation confidence High

Genome context

MA_175803: 1444-1531 [+]

Mature pab-miR1311a-5p

• Accession: MIMAT0037386
• Description: Picea abies pab-miR1311a-5p mature miRNA
• Sequence: 19 - CGCACUGGCAUAACUCUGACC - 39
• Evidence: experimental ; Illumina [2]

Mature pab-miR1311a-3p

• Accession: MIMAT0018162
• Description: Picea abies pab-miR1311a-3p mature miRNA
• Sequence: 51 - UCAGAGUUUUGCCAGUUCCGCC - 72
• Evidence: experimental ; cloned [1], Illumina [2]

References

1. PubMed ID: 20561211
   MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce
   "Yakovlev IA, Fossdal CG, Johnsen O"
   "New Phytol (2010) 187:1154-1169


2. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918