Stem-loop tgu-mir-10a

Accession

MI0016248

Description

Taeniopygia guttata tgu-mir-10a precursor miRNA

Sequence

acagaauguuauuacguugucuauauaUACCCUGUAGAACCGAAUUUGUgugauauucauauagucacAGAUUCGAUUCUAGGGGAAUauauggucgaugcaaaaacuucac
...(((.(((.((.(((((.((((((((.((((.(((((.((((((((((...(((....)))..)))))))))).))))))))).)))))))).))))).)).))))))..

Structure

aca   u   a  a     u        A    G     C          uga   u 
   gaa guu uu cguug cuauauaU CCCU UAGAA CGAAUUUGUg   uau c
   ||| ||| || ||||| |||||||| |||| ||||| ||||||||||   |||  
   cuu caa aa guagc gguauaUA GGGG AUCUU GCUUAGAcac   aua a
-ca   -   a  c     u        A    -     A          -ug   u 

Annotation confidence Not enough data

Genome context

chr7: 17079281-17079392 [+]

Mature tgu-miR-10a-5p

• Accession: MIMAT0018618
• Description: Taeniopygia guttata tgu-miR-10a-5p mature miRNA
• Sequence: 28 - UACCCUGUAGAACCGAAUUUGU - 49
• Evidence: experimental ; Illumina [2]

Mature tgu-miR-10a-3p

• Accession: MIMAT0027035
• Description: Taeniopygia guttata tgu-miR-10a-3p mature miRNA
• Sequence: 69 - AGAUUCGAUUCUAGGGGAAU - 88
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 21627805
   Song exposure regulates known and novel microRNAs in the zebra finch auditory forebrain
   Gunaratne PH, Lin YC, Benham AL, Drnevich J, Coarfa C, Tennakoon JB, Creighton CJ, Kim JH, Milosavljevic A, Watson M, Griffiths-Jones S, Clayton DF
   BMC Genomics (2011) 12:277


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727