Stem-loop mghv-mir-M1-13

Accession

MI0016253

Description

Mouse gammaherpesvirus 68 mghv-mir-M1-13 precursor miRNA

Sequence

UGGGAAGAGUCUGUUGAGUGGCcgcguagguuguaagcUAUCUCAUGUGAGCUCUUCUUU
.((((((((((...((((((((.(((.....)))..)))).))))...)).)))))))).

Structure

U        -  UGU    -    -c   u 
 GGGAAGAG UC   UGAG UGGC  gcg a
 |||||||| ||   |||| ||||  ||| g
 UUCUUCUC AG   ACUC AUcg  ugu g
U        G  UGU    U    aa   u 

Annotation confidence Not enough data

Genome context

U97553: 3749-3808 [+]

Clustered miRNAs

14 other miRNAs are < 10 kb from mghv-mir-M1-13

Mature mghv-miR-M1-13-5p

• Accession: MIMAT0018172
• Description: Mouse gammaherpesvirus 68 mghv-miR-M1-13-5p mature miRNA
• Sequence: 1 - UGGGAAGAGUCUGUUGAGUGGC - 22
• Evidence: experimental ; 454 [1], Illumina [2], Northern [2], RT-PCR [2]

Mature mghv-miR-M1-13-3p

• Accession: MIMAT0018173
• Description: Mouse gammaherpesvirus 68 mghv-miR-M1-13-3p mature miRNA
• Sequence: 39 - UAUCUCAUGUGAGCUCUUCUUU - 60
• Evidence: experimental ; 454 [1], RT-PCR [1]

References

1. PubMed ID: 20668074
   Identification and analysis of expression of novel microRNAs of murine gammaherpesvirus 68
   "Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H"
   "J Virol (2010) 84:10266-10275


2. PubMed ID: 20660200
   Identification of novel microRNA-like molecules generated from herpesvirus and host tRNA transcripts
   "Reese TA, Xia J, Johnson LS, Zhou X, Zhang W, Virgin HW"
   "J Virol (2010) 84:10344-10353