Stem-loop osa-MIR1862f

Accession

MI0017248

Description

Oryza sativa osa-MIR1862f precursor miRNA

Literature search

11 open access papers mention osa-MIR1862f
(14 sentences)

Sequence

69103 reads, 189.0 reads per million, 141 experiments

cuuAAAAUAAACCAGCCUCGUAaagaauggaguacauucuagcacuacuagcauguauAUGAGGUUGGUUUAUUUUGGa
.((((((((((((((((((((..........((((((.((((.....)))).)))))))))))))))))))))))))).

Structure

c                    Aaagaaugga      u    c 
 uuAAAAUAAACCAGCCUCGU          guacau cuag a
 ||||||||||||||||||||          |||||| |||| c
 GGUUUUAUUUGGUUGGAGUA          uaugua gauc u
a                    ----------      c    a 

Annotation confidence Medium

Genome context

1: 8208363-8208439 [-]

Mature osa-miR1862f-5p

• Accession: MIMAT0056165
• Description: Oryza sativa osa-miR1862f-5p mature miRNA
• Sequence: 4 - AAAAUAAACCAGCCUCGUA - 22
• Evidence: experimental ; unknown

Mature osa-miR1862f-3p

• Accession: MIMAT0019669
• Description: Oryza sativa osa-miR1862f-3p mature miRNA
• Sequence: 59 - AUGAGGUUGGUUUAUUUUGG - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21113019
   Identification and analysis of seven H(2)O(2)-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)
   "Li T, Li H, Zhang YX, Liu JY"
   "Nucleic Acids Res (2011) 39:2821-2833