Stem-loop osa-MIR3979

Accession

MI0017251

Description

Oryza sativa osa-MIR3979 precursor miRNA

Literature search

10 open access papers mention osa-MIR3979
(15 sentences)

Sequence

214 reads, 148 reads per million, 2 experiments

gguuuucuuggaUCUCUCUCUCCCUUGAAGGCuaucucauggagguuugauguacaccauuguugccuaagaaacugagaaagcCUUCGGGGGAGGAGAGAAGCcaagcaagcc
(((((.(((((.((((((.((((((((((((((.((((((..((((.(((((.....)))))..))))..)....))))).))))))))))))))))))))..))))).)))))

Structure

     u     -a      U              a     ---- gg    -u     u 
gguuu cuugg  UCUCUC CUCCCUUGAAGGCu ucuca    u  aggu  ugaug a
||||| |||||  |||||| |||||||||||||| |||||    |  ||||  ||||| c
ccgaa gaacC  AGAGAG GAGGGGGCUUCcga agagu    g  uccg  guuac a
     c     GA      -              a     caaa aa    uu     c 

Annotation confidence High

Genome context

Chr11: 19480150-19480263 [+]

Mature osa-miR3979-5p

• Accession: MIMAT0019673
• Description: Oryza sativa osa-miR3979-5p mature miRNA
• Sequence: 13 - UCUCUCUCUCCCUUGAAGGC - 32
• Evidence: experimental ; Illumina [1]

Mature osa-miR3979-3p

• Accession: MIMAT0019674
• Description: Oryza sativa osa-miR3979-3p mature miRNA
• Sequence: 85 - CUUCGGGGGAGGAGAGAAGC - 104
• Evidence: experimental ; Illumina [1-3]

References

1. PubMed ID: 21113019
   Identification and analysis of seven H(2)O(2)-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)
   "Li T, Li H, Zhang YX, Liu JY"
   "Nucleic Acids Res (2011) 39:2821-2833


2. PubMed ID: 21791435
   Differential expression of the microRNAs in superior and inferior spikelets in rice (Oryza sativa)
   "Peng T, Lv Q, Zhang J, Li J, Du Y, Zhao Q"
   "J Exp Bot (2011) 62:4943-4954


3. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207