Stem-loop osa-MIR2873b

Accession

MI0017257

Description

Oryza sativa osa-MIR2873b precursor miRNA

Literature search

2 open access papers mention osa-MIR2873b
(2 sentences)

Sequence

12180 reads, 46.0 reads per million, 142 experiments

uacauucccaccaaauaUCAAGUUCAAACUCAACUUuauuuaggaguaacagaaaagacauuuugggugaaugguaacaugacacuauucaccuagaauuucucuuuuuuguuucucucaaaugaagcuaaguUUGGACUUGAGAUUUGGUAUGaaugua
(((((((..(((((((.(((((((((((((...((((((((.((((.(((((((((((.((((((((((((((((........))))))))))))))))...))))))))))).)))).))))))))...))))))))))))).)))))))..)))))))

Structure

       cc       a             CAA        a    u           --c                aac 
uacauuc  accaaau UCAAGUUCAAACU   CUUuauuu ggag aacagaaaaga   auuuugggugaauggu   a
|||||||  ||||||| |||||||||||||   |||||||| |||| |||||||||||   ||||||||||||||||    
auguaaG  UGGUUUA AGUUCAGGUUuga   gaaguaaa ucuc uuguuuuuucu   uaagauccacuuauca   u
       UA       G             auc        c    u           cuu                cag 

Annotation confidence Low

Genome context

2: 18974743-18974902 [+]

Mature osa-miR2873b-5p

• Accession: MIMAT0056167
• Description: Oryza sativa osa-miR2873b-5p mature miRNA
• Sequence: 18 - UCAAGUUCAAACUCAACUU - 36
• Evidence: experimental ; unknown

Mature osa-miR2873b-3p

• Accession: MIMAT0019685
• Description: Oryza sativa osa-miR2873b-3p mature miRNA
• Sequence: 134 - UUGGACUUGAGAUUUGGUAUG - 154
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21113019
   Identification and analysis of seven H(2)O(2)-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)
   "Li T, Li H, Zhang YX, Liu JY"
   "Nucleic Acids Res (2011) 39:2821-2833