Stem-loop osa-MIR3982

Accession

MI0017258

Description

Oryza sativa osa-MIR3982 precursor miRNA

Sequence

18 reads, 18 reads per million, 2 experiments

cgaugugGCGCUCCACGUAGGCAACAAUuuugcauccggcccccuuuugcaggacagcguggugguaauauuguacuuagccccuuugagccacaguaccaccccgaaacuccccgaaauccccaaaucccuccucccucacaggagcucaaaggagcuaagugcaauuuuuggaugaggcuggacgcaaaauAGUUGCCUACAUGGAGCGCCAcgucg
(((((((((((((((.(((((((((.(((((((.(((((((((((..(((......))).)).))....((((((((((((.(((((((((.............((........))...............((((.......))))))))))))).))))))))))))..........))))))).))))))).))))))))).)))))))))))))))

Structure

               C         A       a       cccuuuugcaggacagcguggugguaau            c         cacaguaccaccccgaaacuccccga 
cgaugugGCGCUCCA GUAGGCAAC AUuuugc uccggcc                            auuguacuuagc ccuuugagc                          a
||||||||||||||| ||||||||| ||||||| |||||||                            |||||||||||| |||||||||                          a
gcugcACCGCGAGGU CAUCCGUUG uaaaacg aggucgg                            uaacgugaaucg ggaaacucg                          u
               A         A       c       ------------------aguagguuuu            a         aggacacucccuccucccuaaacccc 

Annotation confidence Not enough data

Genome context

Chr11: 1384740-1384958 [-]

Mature osa-miR3982-5p

• Accession: MIMAT0019686
• Description: Oryza sativa osa-miR3982-5p mature miRNA
• Sequence: 8 - GCGCUCCACGUAGGCAACAAU - 28
• Evidence: experimental ; Illumina [1]

Mature osa-miR3982-3p

• Accession: MIMAT0019687
• Description: Oryza sativa osa-miR3982-3p mature miRNA
• Sequence: 194 - AGUUGCCUACAUGGAGCGCCA - 214
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21113019
   Identification and analysis of seven H(2)O(2)-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)
   "Li T, Li H, Zhang YX, Liu JY"
   "Nucleic Acids Res (2011) 39:2821-2833