Stem-loop osa-MIR3982

Accession

MI0017258

Description

Oryza sativa osa-MIR3982 precursor miRNA

Literature search

1 open access papers mention osa-MIR3982
(1 sentences)

Sequence

33848 reads, 132.0 reads per million, 142 experiments

cgauguggCGCUCCACGUAGGCAACAAUUuugcauccggcccccuuuugcaggacagcguggugguaauauuguacuuagccccuuugagccacaguaccaccccgaaacuccccgaaauccccaaaucccuccucccucacaggagcucaaaggagcuaagugcaauuuuuggaugaggcuggacgcaaaauAGUUGCCUACAUGGAGCGCCacgucg
(((((((((((((((.(((((((((.(((((((.(((((((((((..(((......))).)).))....((((((((((((.(((((((((.............((........))...............((((.......))))))))))))).))))))))))))..........))))))).))))))).))))))))).)))))))))))))))

Structure

               C         A       a       cccuuuugcaggacagcguggugguaau            c         cacaguaccaccccgaaacuccccga 
cgauguggCGCUCCA GUAGGCAAC AUUuugc uccggcc                            auuguacuuagc ccuuugagc                          a
||||||||||||||| ||||||||| ||||||| |||||||                            |||||||||||| |||||||||                          a
gcugcaCCGCGAGGU CAUCCGUUG uaaaacg aggucgg                            uaacgugaaucg ggaaacucg                          u
               A         A       c       ------------------aguagguuuu            a         aggacacucccuccucccuaaacccc 

Annotation confidence Medium

Genome context

11: 1384740-1384958 [-]

Mature osa-miR3982-5p

• Accession: MIMAT0019686
• Description: Oryza sativa osa-miR3982-5p mature miRNA
• Sequence: 9 - CGCUCCACGUAGGCAACAAUU - 29
• Evidence: experimental ; Illumina [1]

Mature osa-miR3982-3p

• Accession: MIMAT0019687
• Description: Oryza sativa osa-miR3982-3p mature miRNA
• Sequence: 194 - AGUUGCCUACAUGGAGCGCC - 213
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21113019
   Identification and analysis of seven H(2)O(2)-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)
   "Li T, Li H, Zhang YX, Liu JY"
   "Nucleic Acids Res (2011) 39:2821-2833