Stem-loop cel-mir-4813

Accession

MI0017543

Description

Caenorhabditis elegans cel-mir-4813 precursor miRNA

Literature search

2 open access papers mention cel-mir-4813
(2 sentences)

Sequence

764 reads, 28 reads per million, 14 experiments

auuucaccAGACUAUCUAGGAAAUAUUGAACUaauacaaauuuuagUUCAAUAUACCGGAUGGUCUGGugaaagcaa
.((((((((((((((((.((..((((((((((((........)))))))))))).))))))))))))))))))....

Structure

---a                A  AA            uac 
    uuucaccAGACUAUCU GG  AUAUUGAACUaa   a
    |||||||||||||||| ||  ||||||||||||    
    aaaguGGUCUGGUAGG CC  UAUAACUUgauu   a
aacg                -  -A            uua 

Annotation confidence High

Genome context

chrIII: 4571640-4571716 [+]

Mature cel-miR-4813-5p

• Accession: MIMAT0020000
• Description: Caenorhabditis elegans cel-miR-4813-5p mature miRNA
• Sequence: 9 - AGACUAUCUAGGAAAUAUUGAACU - 32
• Evidence: experimental ; Illumina [1]

Mature cel-miR-4813-3p

• Accession: MIMAT0020001
• Description: Caenorhabditis elegans cel-miR-4813-3p mature miRNA
• Sequence: 47 - UUCAAUAUACCGGAUGGUCUGG - 68
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21085120
   Formation, regulation and evolution of Caenorhabditis elegans 3'UTRs
   "Jan CH, Friedman RC, Ruby JG, Bartel DP"
   "Nature (2011) 469:97-101


2. PubMed ID: 21911355
   miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades
   "Friedlander MR, Mackowiak SD, Li N, Chen W, Rajewsky N"
   "Nucleic Acids Res (2012) 40:37-52