Stem-loop gma-MIR162b

Accession

MI0017825

Description

Glycine max gma-MIR162b precursor miRNA

Literature search

10 open access papers mention gma-MIR162b
(15 sentences)

Sequence

2864624 reads, 6472.0 reads per million, 178 experiments

ugaggugaagucacUGGAGGCAGCGGUUCAUCGAUCUcuuccugaauuugguuguggaagaacacaaagcaagaaucggUCGAUAAACCUCUGCAUCCAGcgcucacuuu
.(((((((.(.(.(((((.((((.((((.(((((((..(((.((..(((((((.......))).)))).)).)))..))))))).)))).)))).))))).)))))))))

Structure

u       a u a     G    C    C       Uc   c  aa    -   gu 
 gagguga g c cUGGA GCAG GGUU AUCGAUC  uuc ug  uuug guu  g
 ||||||| | | ||||| |||| |||| |||||||  ||| ||  |||| |||  g
 uuucacu c g GACCU CGUC CCAA UAGCUgg  aag ac  aaac caa  a
-       - - c     A    U    A       cu   a  -g    a   ga 

Annotation confidence High

Genome context

chr5: 1431946-1432055 [+]

Mature gma-miR162b-5p

• Accession: MIMAT0054171
• Description: Glycine max gma-miR162b-5p mature miRNA
• Sequence: 15 - UGGAGGCAGCGGUUCAUCGAUCU - 37
• Evidence: experimental ; unknown

Mature gma-miR162b-3p

• Accession: MIMAT0020974
• Description: Glycine max gma-miR162b-3p mature miRNA
• Sequence: 80 - UCGAUAAACCUCUGCAUCCAG - 100
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 21663675
   Identification of novel soybean microRNAs involved in abiotic and biotic stresses
   Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
   BMC Genomics (2011) 12:307


2. PubMed ID: 21504877
   MicroRNAs in the shoot apical meristem of soybean
   "Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS, Singh MB, Carroll BJ, Bhalla PL"
   "J Exp Bot (2011) 62:2495-2506