Stem-loop gma-MIR168b

Accession

MI0017835

Description

Glycine max gma-MIR168b precursor miRNA

Literature search

23 open access papers mention gma-MIR168b
(86 sentences)

Sequence

2312853 reads, 8428.0 reads per million, 178 experiments

cggucucuaauUCGCUUGGUGCAGGUCGGGAACcgguuuucgcgcggaauggaggaacggucgccggcggcgaauuggaUCCCGCCUUGCAUCAACUGAAUcggaggccg
((((((((.(((((.((((((((((.(((((.(((((((((((.(((..((......))....))))))).))))))).))))).)))))))))).))))).))))))))

Structure

        a     C          U     A       -    g   --aa  ga 
cggucucu auUCG UUGGUGCAGG CGGGA Ccgguuu ucgc cgg    ug  g
|||||||| ||||| |||||||||| ||||| ||||||| |||| |||    ||   
gccggagg UAAGU AACUACGUUC GCCCU gguuaag ggcg gcc    gc  g
        c     C          C     a       c    -   gcug  aa 

Annotation confidence High

Genome context

chr1: 48944581-48944690 [-]

Mature gma-miR168b-5p

• Accession: MIMAT0020985
• Description: Glycine max gma-miR168b-5p mature miRNA
• Sequence: 12 - UCGCUUGGUGCAGGUCGGGAAC - 33
• Evidence: experimental ; 454 [1], Illumina [2-3]

Mature gma-miR168b-3p

• Accession: MIMAT0054179
• Description: Glycine max gma-miR168b-3p mature miRNA
• Sequence: 80 - UCCCGCCUUGCAUCAACUGAAU - 101
• Evidence: experimental ; unknown

References

1. PubMed ID: 21663675
   Identification of novel soybean microRNAs involved in abiotic and biotic stresses
   Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
   BMC Genomics (2011) 12:307


2. PubMed ID: 21504877
   MicroRNAs in the shoot apical meristem of soybean
   "Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS, Singh MB, Carroll BJ, Bhalla PL"
   "J Exp Bot (2011) 62:2495-2506


3. PubMed ID: 24475082
   Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons
   Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ
   PLoS One (2014) 9:e86153