Stem-loop gma-MIR482c

Accession

MI0017851

Description

Glycine max gma-MIR482c precursor miRNA

Literature search

21 open access papers mention gma-MIR482c
(43 sentences)

Sequence

6055814 reads, 11764.0 reads per million, 178 experiments

agaauuugugGGAAUGGGCUGAUUGGGAAGUaaugagauugagcaauacauuuaauuucUUCCCAAUUCCGCCCAUUCCUAUGauuucug
((((.((((((((((((((.(((((((((.....(((((((((.......))))))))))))))))))..)))))))))))))).)))).

Structure

-    u              -U         GUaau         ca 
 agaa uugugGGAAUGGGC  GAUUGGGAA     gagauugag  a
 |||| ||||||||||||||  |||||||||     |||||||||  u
 ucuu aGUAUCCUUACCCG  UUAACCCUU     cuuuaauuu  a
g    u              CC         -----         ac 

Annotation confidence High

Genome context

chr18: 57154765-57154854 [-]

Mature gma-miR482c-5p

• Accession: MIMAT0021001
• Description: Glycine max gma-miR482c-5p mature miRNA
• Sequence: 11 - GGAAUGGGCUGAUUGGGAAGU - 31
• Evidence: experimental ; Illumina [2-3]

Mature gma-miR482c-3p

• Accession: MIMAT0021002
• Description: Glycine max gma-miR482c-3p mature miRNA
• Sequence: 60 - UUCCCAAUUCCGCCCAUUCCUAUG - 83
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 21663675
   Identification of novel soybean microRNAs involved in abiotic and biotic stresses
   Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
   BMC Genomics (2011) 12:307


2. PubMed ID: 21504877
   MicroRNAs in the shoot apical meristem of soybean
   "Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS, Singh MB, Carroll BJ, Bhalla PL"
   "J Exp Bot (2011) 62:2495-2506


3. PubMed ID: 24475082
   Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons
   Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ
   PLoS One (2014) 9:e86153